Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs200882082 chr11:125573435 CTT/C 7.92E-5 175 16.12 14.18 5.03 KM Plot
PAAD rs201030732 chr11:49732796 G/C 2.4E-5 174 15.4 15.67 0.4 KM Plot
PAAD rs201290822 chr2:70518962 T/TA 0 171 15.4 17.4 1.03 KM Plot
PAAD rs201721193 chr1:227394636 TTTA/T 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs201735947 chr11:125574365 AC/A 0.000112 177 16.08 14.18 5.03 KM Plot
PAAD rs201858673 chr3:39073034 A/C 0.000156 177 15.2 16.37 7.47 KM Plot
PAAD rs201894520 chr8:72548264 C/CT 4.49E-8 174 15.77 12.18 3.17 KM Plot
PAAD rs201969250 chr15:78311921 C/CT 0 172 15.43 17.78 1.03 KM Plot
PAAD rs201977180 chr6:159750145 GA/G 5.79E-8 178 15.43 21.15 3.17 KM Plot
PAAD rs201995125 chr1:227295148 G/GTC 3.2E-5 178 15.53 15.65 3.9 KM Plot
PAAD rs202013769 chr11:49732805 A/C 2.4E-5 174 15.4 15.67 0.4 KM Plot
PAAD rs202036941 chr5:127456149 C/G 0.000108 176 16.17 13.95 7.87 KM Plot
PAAD rs202067373 chr3:136685666 C/G 8.67E-5 174 15.62 15.43 4 KM Plot
PAAD rs202076125 chr11:49732797 CTTGTGGA/C 2.4E-5 174 15.4 15.67 0.4 KM Plot
PAAD rs202195272 chr6:26959876 G/A 1.4E-9 177 15.3 16.65 2.2 KM Plot